Hepatitis C Outbreak in Haemato-Oncology Ward: A Challenge of Investigating the Transmission Mechanism in Patients with Multiple Exposures

Research Article

Austin J Public Health Epidemiol. 2019; 6(2): 1085.

Hepatitis C Outbreak in Haemato-Oncology Ward: A Challenge of Investigating the Transmission Mechanism in Patients with Multiple Exposures

Rosinska M1*, Stepien M1, Caraballo Cortes K3, Janiak M3, Radkowski M3, Godzik P1, Gorczyca A2, Wszolek M2, Orzel-Nowak A2, Olszowska-Pason R2, Grabarczyk P4 and Sadkowska-Todys M1

1National Institute of Public Health – National Institute of Hygiene, Poland

2State Sanitary Inspection, Poland

3Department of Immunopathology of Infectious and Parasitic Diseases, Medical University of Warsaw, Poland

4Department of Virology, Institute of Hematology and Transfusiology, Poland

*Corresponding author: Rosinska M, National Institute of Public Health – National Institute of Hygiene, Warsaw, Poland

Received: July 01, 2019; Accepted: July 29, 2019; Published: August 05, 2019

Abstract

Background: Nosocomial transmission of Hepatitis C Virus (HCV) continues to occur, even in developed countries. Recent HCV outbreaks most often concern vulnerable populations, such as patients of haemodialysis units, oncology wards and CT/MRI scanning units. We report an investigation of an outbreak in haemato - oncology ward to determine transmission mechanisms and to discuss challenges arising in these settings.

Methods: We include as cases previously undiagnosed HCV infected patients, hospitalized in the haemato-oncology ward between 1st August and 31st October with outbreak strain confirmed with Next-Generation Sequencing (NGS) analysis of Hypervariable Region 1 (HVR1). The required similarity threshold for outbreak strain was 3.7% genetic distance. We selected the exposure period based on HCV incubation time, due to multiple hospitalizations of all patients in the implicated ward. We attempted to screen all patients hospitalized during exposure period and collected exposure data from medical records.

Results: Of 129 people eligible for screening, 34 died before being reached, 17 refused or could not be contacted, and 78 were tested. HCV infection was confirmed (HCV-RNA) in 11 (14%) patients, of whom in seven HVR1 amplification was feasible and all harboured the outbreak strain. Reception of chemotherapy in August 16-31 (AOR 30.17, 95% CI 2.45-371.21) and in October 1-15 (35.09, 2.53-487.28) was significantly associated with infection. Infected batches were excluded as source since patients received different regimens. However, minor procedures, such as i.v. line flushing, were not fully documented. Multidose vials of saline were used.

Conclusion: Our results indicate a close relationship of the virus in the haemato-oncology ward patients suggesting a common source of infection, despite inconclusive exposure analysis. Plausible transmission route includes breaches in minor procedures. As HCV outbreak investigations inevitably rely on medical documentation, we recommend that at least those minor procedures, which were previously linked to transmission, be documented in detail.

Keywords: HCV; Hepatitis C; Healthcare associated infections; Infection transmission; Molecular epidemiology

Introduction

European surveillance data attribute the majority of newly diagnosed Hepatitis C (HCV) infections to injecting drug use. Likewise, people who inject drugs constitute the most affected group in the European countries [1–3]. Nonetheless, a substantial proportion of HCV cases do not report injecting drug use. While some of the cases, especially among men who have sex with men appear to be transmitted sexually, many report only exposures to medical invasive procedures. Although infrequent in developed countries, healthcare related transmission risk still persists despite elimination of the risk associated with blood transfusions [4,5] and it may be especially relevant to patients with conditions requiring frequent medical interventions, in populations with higher background prevalence such as patients of haemodialysis units or diabetes patients [4,6,7]. Infections occur in relation to breeches in safety procedures or implementation of inadequate procedures, notably during unsafe injections [4].

In Poland the surveillance data indicate that the past or current transmission related to medical procedures continues to impact the current hepatitis C burden. This is confirmed by seroprevalence and case-control studies identifying transfusion before 1992 as the key risk factor for prevalent cases. Other risk factors include multiple hospitalizations and minor medical procedures. The association with particular procedures is not consistent across studies, drawing attention to the fact that different medical procedures may be involved in different populations [8–10]. Furthermore, medical procedures, especially minor medical and dental procedures tend to still contribute to the spread of the HCV infection in Poland [11–13].

Occurrence of nosocomial outbreaks may be also considered as an indicator of recent transmission events, for which the actual transmission mechanism could be identified. In a review carried out in the United States a substantial number of HCV outbreaks was identified in outpatient settings, particularly in haemodialysis centres, but also in hematology/ oncology and pain remediation clinics [6]. Similar HCV outbreaks have been also reported in Europe. In the published literature, the most commonly reported hepatitis C outbreaks in Europe concern haemodialysis units, oncology wards and CT/MRI scanning units [14].

Outbreak investigations in case of HCV infection can pose different methodological challenges. Due to predominantly asymptomatic course of disease, it is very likely that many outbreaks, especially smaller ones, are not identified. Moreover, as cases are usually diagnosed with delay, the confirmation of a link between cases is not evident, unless genetic identification of the outbreak strains is performed. The genetic analysis is complicated by existence of multiple quasi-species within one host [15], given documented possibility of transmission of minority variants [16]. Next Generation Sequencing (NGS) - based variant analysis allows to resolve this difficulty [16,17].

We report an outbreak among haemato-oncology patients in a county hospital in Poland. The suspected outbreak was reported in December 2015 to local public health department, with five cases initially diagnosed among patients of haemato-oncology ward. In addition to investigation of the possible transmission mechanisms, we aim to discuss technical difficulties arising in these settings.

Methods

Initial information and the exposure period

At the time of the outbreak, report five patients (confirmed HCV-RNA) have already been diagnosed in the ward, two of whom developed jaundice and three tested due to high levels of ALT. The first patient was diagnosed in October, the second in November and the other three in December. Initially local clinicians suspected exacerbation of chronic HCV infection due to chemotherapy [18], which caused the delay in reporting of the outbreak. The possibility of reactivation was later excluded as the patients did not receive the implicated chemotherapy regimens and earlier HCV infection was not documented in any of the five patients [19]. The review of surveillance data at local and regional level identified additional two cases of acute hepatitis C (both were diagnosed because of jaundice) that reported hospitalization in the implicated ward, notified in December 2015 and January 2016. They also negated other major HCV exposures (injecting drugs, tattooing), although one patient also reported hospitalization in a different hospital. In order to identify the possible exposure time we aligned the hospitalization times of all patients. All of them were admitted in the implicated ward multiple times in 2015 and were hospitalized in August 2015, but no single day could be identified when all were present. Moreover, August would fall out of the typical incubation period for acute hepatitis C (3-12 weeks, on average 7 weeks) [20]. We considered, that there could be more than one transmission event or some of the cases could be unrelated to the outbreak. In addition, longer incubation time due to underlying disease or chemotherapy could be taken into account. It was shown that time to HCV seroconversion is longer in patients with haematological disorders [21,22].

Initially, we selected the presumed exposure period based on HCV incubation time and extended it to account for the period when they were all hospitalized. Finally, the exposure period encompassed the time between August 1st and October 31st.

Case definitions

The initial case definition for screening purposes was a previously undiagnosed HCV infected (confirmed by HCV-RNA test) patient, hospitalized in the haemato-oncology ward during the specified exposure period (August 1st and October 31st 2015).

The case definition used for analysis in addition included the results Next-Generation Sequencing (NGS) analysis of Hypervariable Region 1 (HVR1). The case was classified as probable if there was no sample available for genetic analysis or the HCV strain could not be isolated. A patient meeting the screening case definition was considered to be a confirmed outbreak case if at least one of the strains isolated from this individual had a genetic distance of less than 3.7% from at least one variant strain from another patient, i.e. the minimum pairwise distance was less than 3.7%. This criterion was suggested in prior review work [16].

We further supported the selection of the cases possibly from a single transmission event by comparing genetic distances observed between the control sequences and between the case and control sequences.

Data and sample collection

We screened all patients hospitalized during specified exposure period and collected exposure data from medical records. The patients were invited to take part in the investigation, when returning to the hospital for next cycles of chemotherapy or control visits. The remaining patients were contacted at their home address. The patients were offered HCV screening, and a venous blood sample was collected from those who gave their consent. The samples were processed in the hospital laboratory and the sera were frozen and shipped to National Institute of Public Health – National Institute of Hygiene and the Warsaw Medical University for testing. The medical record of the patients were reviewed for all medical procedures associated with possible percutaneous exposure that took place during the exposure period. Based on these data a questionnaire to extract data from other patients records was constructed. All cases were also interviewed with routine surveillance questionnaire comprising also life-style exposures.

We used 10 samples from unrelated acute hepatitis C identified in blood donation service as control samples for molecular characteristics of the HVR1 region of the virus.

Laboratory methods

Next-Generation Sequencing (NGS) analysis of Hypervariable Region 1 (HVR1) was used to search for relatedness of HCV variants as described in [23].

In brief, total RNA was extracted from 250 μl of serum using Trizol (Life Technologies, Carlsbad, CA, USA) and subjected to reverse transcription using AccuScript High Fidelity Reverse Transcriptase (Agilent Technologies, Santa Clara, CA, USA) and random hexamers. A region of 175 nt length encompassing HVR1 was amplified in two-step PCR using FastStart High Fidelity Taq DNA Polymerase (Roche, Indianapolis, IN, USA) using sequence-specific promers. Primers employed in the second PCR contained tags recognized by GS Junior sequencing platform, standard 10-nucleotide multiplex identifiers and target-complementary sequence. Approximately 3×107 DNA amplicons were subjected to emulsion PCR using the GS Junior Titanium emPCR Lib-A Kit (454 Life Sciences, Branford, CT, USA). Amplicons were sequenced according to the manufacturer’s protocol using GS Junior platform (454 Life Sciences). HVR1 variants were reconstructed using the program diri_sampler from the Shorah software suite [24]. Subsequently, reconstructed haplotypes of frequency >0.5% were aligned by MEGA (Molecular Evolutionary Genetics Analysis), version 6.0 (https://www.megasoftware.net/) [25].

Statistical analysis

Fisher exact test was used to compare distribution of categorical covariates between cases and controls. Medians of numerical variable were compared with Mann-Whitney test. We used logistic regression to estimate the odds ratio of being a confirmed outbreak case as compared to HCV-RNA negative patients. Due to small sample size we were not able to study the full multivariate model. We investigated the predictors important in univariable analysis in pairs to identify the strongest ones. For factors (exposures) perfectly predicting the outcome the separate indicator variables were created to describe whether the exposure occurred in August, in September or in October.

Results

Of 129 people eligible for screening, 34 died before being reached, 17 refused or could not be contacted, and 78 were tested. HCV infection was confirmed in 11 (14%) patients, of whom in seven HVR1 amplification was feasible.

NGS results and case classification

NGS analysis revealed intrahost variability of HVR1 both in the samples from examined patients and the control samples from acute HCV infections identified in blood donors. Among the seven patients the predominant strain accounted for 54.1% - 100% of frequency of all strains identified and among the controls the predominant strain accounted for 32.6%-97.6% of frequency. The pairwise minimal distances between the cases meeting the screening definition varied between 0.0% and 1.3%, while between patients and controls they remained between 9.7% - 21.8% (apart from one 0.0% distance, between Pt_8 and C_118) and between controls – 0.0% - 16.6% (Table 1). The minimal distances between the strains isolated from the patients coincided with the distances between the predominating strains. The patient Pt_8 harboured three unrelated strains, one of which was similar to the strains isolated from other cases (minimal pairwise distances from 0.0% to 1.3%). Another strain, with relative frequency of 3%, was closely related (0.0% distance) to the strains isolated from the control C_118. The minimal distances between the strains isolated from controls related to minority strains. Distances between the predominating strains exceeded 10%.