The Detection and Identification of Mixed Strains of Fusobacterium necrophorum in Foot Rot Lesions of Sheep in Kashmir, India

Review Article

Austin Immunol. 2018; 3(1): 1015.

The Detection and Identification of Mixed Strains of Fusobacterium necrophorum in Foot Rot Lesions of Sheep in Kashmir, India

Farooq S1*, Wani SA2, Hassan MN3, Aalamgeer S2, Kashoo ZA2, Magray SN2 and Bhat MA4

1KVK-Kupwara, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir (SKUAST-K), India

2Division of Veterinary Microbiology and Immunology, SKUAST-K, India

3KVK-Nyoma, SKUAST-K, India

4Division of Veterinary Microbiology and Immunology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Jammu (SKUAST-J), India

*Corresponding author: Shaheen Farooq, Subject Matter Specialist (Animal Science), Krishi Vigyan Kendra, Kupwara, India

Received: March 01, 2018; Accepted: March 21, 2018; Published: March 28, 2018

Abstract

The objective of this study was to determine the prevalence and identification of lktA variant strains of F. necrophorum in the foot rot lesions of sheep. The detection of F. necrophorum was carried out by Polymerase Chain Reaction (PCR) targeting the leukotoxin (lktA) gene fragment and identification of lktA variant strains was done by PCR–Single Stranded Conformational Polymorphism (PCR-SSCP) and gene sequencing of the 450 swabs collected from foot rot lesions of sheep, 117 were positive for F. necrophorum of the 50 swabs collected from apparently asymptomatic sheep, only one was positive for F. necrophorum. The overall prevalence of F. necrophorum in foot rot affected sheep in Kashmir valley was 26%, with the highest prevalence of 34.8% recorded in samples from the districts of Kulgam and Pulwama, and the lowest (20%) in Baramulla district. PCR-SSCP of lktA gene fragment revealed the presence of three lktA variants, designated as JKS-F1/ F2/ F3, while two samples (1.70%) showed the presence of multiple lktA variant strains of F. necrophorum on a single foot rot affected sheep hoof. The JKS-F3 was the most frequent (75.4%), followed by JKS-F2 (14.4%) and JKS-F1 (8.4%) lktA variant, respectively. Of the three lktA variants identified, JKS-F3 was detected in 74 (86.0%) out of 86 samples taken from foot rot affected sheep with lesion score 4. The data suggest that JKS-F3 is the predominant and most adapted lktA variant of F. necrophorum and is associated with severe foot rot in sheep, hence a significant variant contributing to the severity and duration of the disease. This appears to be the first report on the presence of more than one lktA variant of F. necrophorum in a foot rot lesion of sheep.

Keywords: Fusobacterium necrophorum; Ovine foot rot; PCR-SSCP; lktA gene

Introduction

Foot rot is a contagious bacterial infection of the feet of sheep that causes lameness, and significant production and economic losses worldwide. The disease is characterized by an exudative inflammation, followed by necrosis of the epidermal tissue of the inter digital skin and hoof matrix, resulting in separation of the hoof from the underlying soft tissue. The affected animal’s exhibit lameness, loss of body weight, reduced wool and meat production [1]. The infectious syndrome is caused by the synergistic action of several bacterial species, particularly Dichelobacter nodosus, and Fusobacterium necrophorum [2]. Both the anaerobes are found together at a significantly higher rate in severe foot rot lesions in sheep in which D. nodosus drives the pathogenesis of foot rot from initiation of Interdigital Dermatitis (ID) to Severe Foot Rot (SFR) and F. necrophorum contributing to the severity and duration of SFR [3,4].

F. necrophorum is a Gram negative, anaerobic, pleomorphic and non-spore-forming bacterium, which is more sensitive to oxygen than D. nodosus [5]. It is a normal resident of manurecontaminated environments. The F. necrophorum has two subspecies; F. necrophorum subsp. necrophorum (formally biovar A) and F. necrophorum subsp. funduliforme (formally biovar B). The subsp. necrophorum is more pathogenic due to a higher lipopolysaccharide content and higher production of leukotoxin [6]. Among a variety of virulence factors, the best described and major virulence factor is leukotoxin, encoded by lktA gene. The lktA gene has been used for the detection of F. necrophorum and to determine variation among its strains [7].

In India foot rot is endemic in the states of Jammu and Kashmir, Andhra Pradesh, Tamil Nadu, Uttar Pradesh and Himachal Pradesh [8,9]. Recently, its severity has increased and attained significant importance in sheep husbandry practices [10,11]. There is very little knowledge about the lktA variant(s) associated with severe foot rot in sheep (lesion score 4) and no study has described the most predominant lktA variant(s) of F. necrophorum in ovine foot rot lesions. The aim of the present investigation was to study the prevalence, isolation and identification of predominant lktA variant of F. necrophorum that is linked to severe foot rot in sheep.

Materials and Methods

Survey

The present survey was conducted from 2012 to 2016 to determine the prevalence of F. necrophorum in foot rot-affected sheep of Kashmir valley. A two-stage simple random sampling procedure was followed. A complete list of all villages falling under the administrative control of these districts were obtained from district offices of respective districts and 5% of villages from each district were selected through a Simple Random Sampling (SRS) procedure. Subsequently, a complete list of household flocks in the selected villages was prepared and again simple random sampling (second stage sampling) was followed to select household flocks. Again 5% of household flocks were selected. These household flocks were finally visited to determine the prevalence of F. necrophorum in foot rot affected sheep.

Collection of clinical samples

A total of 500 swab samples (450 from symptomatic and 50 from healthy asymptomatic sheep) were collected from ninety nine foot rot affected flocks across the valley as detailed in (Table 1). The samples constituted duplicate swab samples of exudates of foot rot lesions with a lesion score of 2 (ID) to 4 (SFR i.e under running of the hard horn of the hoof) collected at the active lesion that developed between the horn of the hoof and the sensitive underlying tissue. One sample from each case was inoculated onto media for isolation and other used for DNA extraction for direct detection of F. necrophorum. Only one foot per sheep was sampled. The swabs used for DNA extraction were transported to laboratory in thioglycolate broth (Hi Media, Mumbai, India). The sampling was done by a single trained researcher to minimize the variation.